Department I Hallermann » Open Source

Open source

We have signed an open letter committing to open source in neuroscience (see also Gleeson et al., Neuron, 96:964-965 ). Below we provide links to available code.

  • Byczkowicz N, Eshra A, Montanaro J, Trevisiol A, Hirrlinger J, Kole MH, Shigemoto R, Hallermann S. HCN channel-mediated neuromodulation can control action potential velocity and fidelity in central axons. (2019) Elife 8. pii:e42766
    At github we provide the corresponding Neuron code.
  • Ritzau-Jost A, Jablonski L, Viotti J, Lipstein N, Eilers J, Hallermann S. Apparent calcium dependence of vesicle recruitment (2018) J Physiol 596:4693-4707
  • Kole MH, Hallermann S, Stuart GJ. Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output (2006) J Neurosci 26:1677-1687
    At ModelDB we provide NEURON code to reproduce the modelling with stochastic gating of HCN channels.
  • Hallermann S, de Kock CP, Stuart GJ, Kole MH. State and location dependence of action potential metabolic cost in cortical pyramidal neurons (2012) Nat Neurosci. 15:1007-1014
    At ModelDB we provide NEURON code to reproduce the modelling results and to calculate the required ATP molecules per cellular compartment.